Index

A

acceleration (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) ambi_param_transform() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method)

attach_existing_data() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) axBOtorchOptimizer (class in optimpv.optimizers.axBOtorch.axBOtorchOptimizer)

B

BaseAgent (class in optimpv.general.BaseAgent) batch_size (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) best_value (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) bounds_descale() (optimpv.general.BaseAgent.BaseAgent method)

BT_model() (in module optimpv.models.RateEqfits.RateEqModel) BTD_model() (in module optimpv.models.RateEqfits.RateEqModel) build_file_handler() (in module optimpv.general.logger) build_stream_handler() (in module optimpv.general.logger)

C

calc_metric() (in module optimpv.general.general) check_duplicated_parameters() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) ClassDecorator (class in optimpv.general.logger) compute_high_density_interval() (optimpv.posterior.lazy_posterior.LazyPosterior method) compute_metrics() (optimpv.posterior.lazy_posterior.LazyPosterior method) convert_parameter_to_basename() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) ConvertParamsAx() (in module optimpv.optimizers.axBOtorch.axUtils) create_generation_strategy() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method)

create_metrics_list() (optimpv.general.BaseAgent.BaseAgent method) (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) create_objective() (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) create_objectives() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) create_search_space() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) CreateObjectiveFromAgent() (in module optimpv.optimizers.axBOtorch.axUtils) CVAgent (class in optimpv.models.DDfits.CVAgent)

D

DBTD_model() (in module optimpv.models.RateEqfits.RateEqModel) DBTD_multi_trap() (in module optimpv.models.RateEqfits.RateEqModel) decorate_callable() (optimpv.general.logger.ClassDecorator method) (optimpv.general.logger.disable_logger method) (optimpv.general.logger.disable_loggers method)

descale_dataframe() (optimpv.general.BaseAgent.BaseAgent method) dim (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) DiodeAgent (class in optimpv.models.Diodefits.DiodeAgent) direct_mean_euclidean_distance() (in module optimpv.general.general) disable_logger (class in optimpv.general.logger) disable_loggers (class in optimpv.general.logger)

E

EGBOAcquisition (class in optimpv.optimizers.axBOtorch.EGBO) EmceeOptimizer (class in optimpv.optimizers.BayesInfEmcee.EmceeOptimizer)

energy_level_offsets() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) evaluate() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method)

F

failure_counter (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) failure_tolerance (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute)

filter() (optimpv.general.logger.OptimpvOutputNameFilter method) FitParam (class in optimpv.general.FitParams)

G

gaussian_pulse_norm() (in module optimpv.models.RateEqfits.Pumps) gaussian_pump() (in module optimpv.models.RateEqfits.Pumps) generate_batch() (in module optimpv.optimizers.axBOtorch.axBOtorchOptimizer) get_all_agent_metric_names() (optimpv.general.BaseAgent.BaseAgent method) get_all_agent_tracking_metric_names() (optimpv.general.BaseAgent.BaseAgent method) get_best_params() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.posterior.lazy_posterior.LazyPosterior method) get_bounds_list() (optimpv.general.BaseAgent.BaseAgent method) get_chain() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) get_df_ax_client_metrics() (in module optimpv.optimizers.axBOtorch.axUtils) get_df_from_ax() (in module optimpv.optimizers.axBOtorch.axUtils) get_flat_samples() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) get_flux_density() (in module optimpv.models.RateEqfits.Pumps)

get_initial_data_from_existing_data_turbo() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) get_initial_points() (in module optimpv.optimizers.axBOtorch.axBOtorchOptimizer) get_logger() (in module optimpv.general.logger) get_max_params() (optimpv.posterior.lazy_posterior.LazyPosterior method) get_mean_params() (optimpv.posterior.lazy_posterior.LazyPosterior method) get_median_params() (optimpv.posterior.lazy_posterior.LazyPosterior method) get_ntotal() (in module optimpv.models.TransferMatrix.TransferMatrixModel) get_SIMsalabim_clean_cmd() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) get_SIMsalabim_clean_cmd_pars() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) get_top_n_best_params() (optimpv.posterior.lazy_posterior.LazyPosterior method) get_top_n_metrics_params() (optimpv.posterior.lazy_posterior.LazyPosterior method) get_tracking_metrics() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) get_VMLC_default_model_kwargs_list() (in module optimpv.optimizers.axBOtorch.axUtils)

H

HysteresisAgent (class in optimpv.models.DDfits.HysteresisAgent)

I

I_mat() (in module optimpv.models.TransferMatrix.TransferMatrixModel) ImpedanceAgent (class in optimpv.models.DDfits.ImpedanceAgent) IMPSAgent (class in optimpv.models.DDfits.IMPSAgent)

initial_carrier_density() (in module optimpv.models.RateEqfits.Pumps) initialize_walkers() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) inv_loss_function() (in module optimpv.general.general) is_inputFile() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method)

J

JVAgent (class in optimpv.models.DDfits.JVAgent)

L

L_mat() (in module optimpv.models.TransferMatrix.TransferMatrixModel) LazyPosterior (class in optimpv.posterior.lazy_posterior) length (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute)

length_max (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) length_min (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) loss_function() (in module optimpv.general.general)

M

make_indices_str() (in module optimpv.general.logger) mean_min_euclidean_distance() (in module optimpv.general.general) module optimpv optimpv.general optimpv.general.BaseAgent optimpv.general.FitParams optimpv.general.general optimpv.general.logger optimpv.general.SuggestOnlyAgent optimpv.models optimpv.models.DDfits optimpv.models.DDfits.CVAgent optimpv.models.DDfits.HysteresisAgent optimpv.models.DDfits.ImpedanceAgent optimpv.models.DDfits.IMPSAgent optimpv.models.DDfits.JVAgent optimpv.models.DDfits.SIMsalabimAgent optimpv.models.Diodefits optimpv.models.Diodefits.DiodeAgent optimpv.models.Diodefits.DiodeModel optimpv.models.RateEqfits optimpv.models.RateEqfits.Pumps optimpv.models.RateEqfits.RateEqAgent optimpv.models.RateEqfits.RateEqModel optimpv.models.TransferMatrix optimpv.models.TransferMatrix.TransferMatrixAgent optimpv.models.TransferMatrix.TransferMatrixModel optimpv.optimizers optimpv.optimizers.axBOtorch optimpv.optimizers.axBOtorch.axBOtorchOptimizer optimpv.optimizers.axBOtorch.axUtils optimpv.optimizers.axBOtorch.EGBO optimpv.optimizers.BayesInfEmcee optimpv.optimizers.BayesInfEmcee.EmceeOptimizer optimpv.optimizers.pymooOpti optimpv.optimizers.scipyOpti optimpv.optimizers.scipyOpti.scipyOptimizer optimpv.posterior optimpv.posterior.exploration_density optimpv.posterior.lazy_posterior optimpv.tests optimpv.tests.test_axBOtorch optimpv.tests.test_emcee optimpv.tests.test_scipy

N

NonIdealDiode_dark() (in module optimpv.models.Diodefits.DiodeModel)

NonIdealDiode_light() (in module optimpv.models.Diodefits.DiodeModel)

O

openFile() (in module optimpv.models.TransferMatrix.TransferMatrixModel) optimize() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) (optimpv.optimizers.axBOtorch.EGBO.EGBOAcquisition method) (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) optimize_least_squares() (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) optimize_sequential() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) optimize_turbo() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) optimpv module optimpv.general module optimpv.general.BaseAgent module optimpv.general.FitParams module optimpv.general.general module optimpv.general.logger module optimpv.general.SuggestOnlyAgent module optimpv.models module optimpv.models.DDfits module optimpv.models.DDfits.CVAgent module optimpv.models.DDfits.HysteresisAgent module optimpv.models.DDfits.ImpedanceAgent module optimpv.models.DDfits.IMPSAgent module optimpv.models.DDfits.JVAgent module optimpv.models.DDfits.SIMsalabimAgent module optimpv.models.Diodefits module optimpv.models.Diodefits.DiodeAgent module optimpv.models.Diodefits.DiodeModel module optimpv.models.RateEqfits module

optimpv.models.RateEqfits.Pumps module optimpv.models.RateEqfits.RateEqAgent module optimpv.models.RateEqfits.RateEqModel module optimpv.models.TransferMatrix module optimpv.models.TransferMatrix.TransferMatrixAgent module optimpv.models.TransferMatrix.TransferMatrixModel module optimpv.optimizers module optimpv.optimizers.axBOtorch module optimpv.optimizers.axBOtorch.axBOtorchOptimizer module optimpv.optimizers.axBOtorch.axUtils module optimpv.optimizers.axBOtorch.EGBO module optimpv.optimizers.BayesInfEmcee module optimpv.optimizers.BayesInfEmcee.EmceeOptimizer module optimpv.optimizers.pymooOpti module optimpv.optimizers.scipyOpti module optimpv.optimizers.scipyOpti.scipyOptimizer module optimpv.posterior module optimpv.posterior.exploration_density module optimpv.posterior.lazy_posterior module optimpv.tests module optimpv.tests.test_axBOtorch module optimpv.tests.test_emcee module optimpv.tests.test_scipy module OptimpvOutputNameFilter (class in optimpv.general.logger)

P

package_SIMsalabim_files() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) params_descale() (optimpv.general.BaseAgent.BaseAgent method) params_rescale() (optimpv.general.BaseAgent.BaseAgent method) params_w() (optimpv.general.BaseAgent.BaseAgent method) plot_all_lazyposterior() (optimpv.posterior.lazy_posterior.LazyPosterior method)

plot_corner() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) plot_density_exploration() (in module optimpv.posterior.exploration_density) plot_lazyposterior_1D_kde() (optimpv.posterior.lazy_posterior.LazyPosterior method) plot_lazyposterior_2D_kde() (optimpv.posterior.lazy_posterior.LazyPosterior method) plot_traces() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) prepare_cmd_pars() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method)

R

RateEqAgent (class in optimpv.models.RateEqfits.RateEqAgent) reconstruct_params() (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method) reformat_CV_data() (optimpv.models.DDfits.CVAgent.CVAgent method) reformat_data() (optimpv.models.RateEqfits.RateEqAgent.RateEqAgent method) reformat_hysteresis_data() (optimpv.models.DDfits.HysteresisAgent.HysteresisAgent method) reformat_impedance_data() (optimpv.models.DDfits.ImpedanceAgent.ImpedanceAgent method) reformat_IMPS_data() (optimpv.models.DDfits.IMPSAgent.IMPSAgent method) reformat_JV_data() (optimpv.models.DDfits.JVAgent.JVAgent method) rescale_array() (optimpv.general.BaseAgent.BaseAgent method) rescale_dataframe() (optimpv.general.BaseAgent.BaseAgent method) restart_triggered (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) run() (optimpv.models.DDfits.CVAgent.CVAgent method) (optimpv.models.DDfits.HysteresisAgent.HysteresisAgent method) (optimpv.models.DDfits.ImpedanceAgent.ImpedanceAgent method) (optimpv.models.DDfits.IMPSAgent.IMPSAgent method) (optimpv.models.DDfits.JVAgent.JVAgent method) (optimpv.models.Diodefits.DiodeAgent.DiodeAgent method) (optimpv.models.RateEqfits.RateEqAgent.RateEqAgent method) (optimpv.models.TransferMatrix.TransferMatrixAgent.TransferMatrixAgent method)

run_Ax() (optimpv.models.DDfits.CVAgent.CVAgent method) (optimpv.models.DDfits.HysteresisAgent.HysteresisAgent method) (optimpv.models.DDfits.ImpedanceAgent.ImpedanceAgent method) (optimpv.models.DDfits.IMPSAgent.IMPSAgent method) (optimpv.models.DDfits.JVAgent.JVAgent method) (optimpv.models.Diodefits.DiodeAgent.DiodeAgent method) (optimpv.models.RateEqfits.RateEqAgent.RateEqAgent method) (optimpv.models.TransferMatrix.TransferMatrixAgent.TransferMatrixAgent method) run_CV_simulation() (optimpv.models.DDfits.CVAgent.CVAgent method) run_hysteresis_simulation() (optimpv.models.DDfits.HysteresisAgent.HysteresisAgent method) run_impedance_simulation() (optimpv.models.DDfits.ImpedanceAgent.ImpedanceAgent method) run_IMPS_simulation() (optimpv.models.DDfits.IMPSAgent.IMPSAgent method) run_JV() (optimpv.models.DDfits.JVAgent.JVAgent method) run_RateEq() (optimpv.models.RateEqfits.RateEqAgent.RateEqAgent method)

S

ScipyOptimizer (class in optimpv.optimizers.scipyOpti.scipyOptimizer) set_optimpv_logger_levels() (in module optimpv.general.logger) set_stderr_log_level() (in module optimpv.general.logger) SIMsalabimAgent (class in optimpv.models.DDfits.SIMsalabimAgent)

square_pump() (in module optimpv.models.RateEqfits.Pumps) success_counter (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) success_tolerance (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.TurboState attribute) SuggestOnlyAgent (class in optimpv.general.SuggestOnlyAgent)

T

target_metric() (optimpv.models.DDfits.CVAgent.CVAgent method) (optimpv.models.DDfits.HysteresisAgent.HysteresisAgent method) (optimpv.models.DDfits.ImpedanceAgent.ImpedanceAgent method) (optimpv.models.DDfits.IMPSAgent.IMPSAgent method) (optimpv.models.DDfits.JVAgent.JVAgent method) (optimpv.models.TransferMatrix.TransferMatrixAgent.TransferMatrixAgent method) test_diff_rec() (in module optimpv.tests.test_axBOtorch) test_DOE_MOO() (in module optimpv.tests.test_axBOtorch) test_DOE_SOO() (in module optimpv.tests.test_axBOtorch) test_DOE_SOO_Turbo() (in module optimpv.tests.test_axBOtorch) test_MOO_trPLtrMC() (in module optimpv.tests.test_axBOtorch)

test_multi_trap() (in module optimpv.tests.test_axBOtorch) test_SOO_diode_fit() (in module optimpv.tests.test_axBOtorch) (in module optimpv.tests.test_scipy) test_SOO_JV_fit_emcee() (in module optimpv.tests.test_emcee) test_SOO_TurBO() (in module optimpv.tests.test_axBOtorch) TMM() (in module optimpv.models.TransferMatrix.TransferMatrixModel) TransferMatrixAgent (class in optimpv.models.TransferMatrix.TransferMatrixAgent) transform_data() (in module optimpv.general.general) transform_data_old() (in module optimpv.general.general) trap_depth_2_energy_level() (optimpv.models.DDfits.SIMsalabimAgent.SIMsalabimAgent method) TurboState (class in optimpv.optimizers.axBOtorch.axBOtorchOptimizer)

U

update_params_with_best_balance() (optimpv.optimizers.axBOtorch.axBOtorchOptimizer.axBOtorchOptimizer method) (optimpv.optimizers.BayesInfEmcee.EmceeOptimizer.EmceeOptimizer method) (optimpv.optimizers.scipyOpti.scipyOptimizer.ScipyOptimizer method)

update_state() (in module optimpv.optimizers.axBOtorch.axBOtorchOptimizer)